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and what for you change file format?!
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What do You mean exactly? What was changed?
You can read out data from device in "*.bin" (binary) or "*.mpt" (file, that contains selected partitions) formats. Also, You can read out each partition separately in "*.bin" format. "*.mpt" file is not binary file, so You can't use it with "Content extractor." If You need to extract data from device using "Content Extractor", just read out full flash from the device and then try to extract data. Also, You can try to extract data from device directly (without reading Full flash), but this will occupy more time.
Also, You can create your own SRF (Smart Repair File) for devices' repairing. Such file could contain different necessary data for repairing - pinout picture, necessary partitions, settings for connecting the device, user manual/help and others.